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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015833391.1_cds_XP_016505210.1_18571
CDS Infomation

[gene=LOC107823132] [db_xref=GeneID:107823132] [protein=probable pectate lyase 8] [protein_id=XP_016505210.1] [location=join(5819..5895,6155..6208,6690..6767,8925..9567,9663..9766,9858..9996,10128..10349)] [gbkey=CDS]
Sequence

ATGGCGGTCTCTTGGAGATCATGTCTATCATTGCTAGTTGTGACAATGCTAGTCATCAAT
GTCAGTGCCAGTAACAGTCCTGAAGAAGCAAAGCAATTTCAGAGCTTAAACAACTCGACA
ATGGCGAAAGGGTTAAGTGAAGAAAACGTACCAAACCATGAAAAACATGCTGTAGATGAT
CCAGAAATGATTGCTTCCATGGTAGACATGAGCATTCGGAATAGTACAGAAAGGAGGAAA
TTGGGTTTTTTCTCATGTGGAACTGGAAATCCTATTGACGATTGCTGGCGCTGTGACCGC
AATTGGCAACGTAACCGCAAGCGCCTAGCTGATTGTGCTATTGGATTTGGACGCAATGCC
ATTGGTGGCCGCGATGGCAAGTACTATGTTGTCACTGACTCGGGTGACGACGACCCCGTA
AATCCCAGACCTGGAACACTTCGTCATGCTGTAATTCAGGACAGGCCATTGTGGATTGTG
TTTAAACGGGACATGGTCATTACCCTTAAGCAAGAATTGATTATGAACAGTTTCAAGACA
ATTGATGGACGCGGTGTCAATGTCCACATTGCCAATGGGGCTTGCATAACTGTCCAATTT
GTTACTAATATCATTATTCATGGCATCAATATTCATGATTGTAAACCAACTGGTAATGCC
ATGGTTCGTAGCTCGCCAAGTCATTATGGTTGGAGGACAATGGCTGATGGTGATGCCATT
TCCATCTTTGGGTCCAGCCACGTTTGGGTTGATCACAACTCTCTCGCTAACTGTGCTGAT
GGCCTCATTGATGCTATCATGGGATCGACTGCGATTACCATCTCCAACAATTATTTTACC
CACCACAATGAGGTGATGCTATTGGGTCACAGCGACTCCTATGTTAGAGACAAGATTATG
CAAGTGACTATTGCCTACAACCATTTTGGTGAGGGTCTCATTCAGAGAATGCCAAGGTGT
AGACATGGTTATTTCCATGTGGTGAACAATGACTATACACACTGGGAGATGTATGCTATT
GGTGGCAGTGCTTCTCCTACAATTAACAGCCAAGGCAACAGATACCTTGCCCCAGCCAAC
CCTTTTGCCAAACAGGTGACACATAGAGTGGAGCCATCAGAAGGAACGTGGAAGAGTTGG
AACTGGAGATCAGATGGAGACCTTATGCTTAATGGAGCCTACTTTACCCCATCCGGACGT
GGCGCTGGAGCCAGTTATGCTAGGGCATCAAGCTTAGCAGCCAAGTCCTCTTCACTAGTT
GGCACTCTTACCTCAAATGCTGGTGCACTTACCTGCCGCAGGGGCCGCCAATGTTAA

Peptide Sequence

PEP ID

XP_016505210.1
PEP Infomation

PREDICTED: probable pectate lyase 8 [Nicotiana tabacum]
Sequence

MAVSWRSCLSLLVVTMLVINVSASNSPEEAKQFQSLNNSTMAKGLSEENVPNHEKHAVDD
PEMIASMVDMSIRNSTERRKLGFFSCGTGNPIDDCWRCDRNWQRNRKRLADCAIGFGRNA
IGGRDGKYYVVTDSGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKT
IDGRGVNVHIANGACITVQFVTNIIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAI
SIFGSSHVWVDHNSLANCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKIM
QVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPAN
PFAKQVTHRVEPSEGTWKSWNWRSDGDLMLNGAYFTPSGRGAGASYARASSLAAKSSSLV
GTLTSNAGALTCRRGRQC

Transcript Sequence

Gene sequence data has not been registered.